PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco019933.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 254aa    MW: 29450 Da    PI: 7.9558
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco019933.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.83.7e-28123216190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fYn YA+++GFs+rk++++k  k+++ +t  ++vCskeg+++++ ++   + + +++ + trtgCka+++vk+++dgkwev  ++ eHnH+l+
  Aco019933.1 123 RFYNLYAYKTGFSIRKATHYKAkKKDNIVTALHYVCSKEGQSKPKVRDqenKGTPKKQMQYTRTGCKAHMRVKRTNDGKWEVVVFVREHNHALV 216
                  5*******************995677788999***********999885445556779999*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-26123216IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
KMAKNKEIIS YLEDLVANNV VTSPVSVTES QDEIDDHEGS SQMNSEEYYE SLFLDATQNR  60
SNYGEESEYP SSDIGINQST DFCSFMHEQS QQEKNFISQC SMKTSHHEPF IGQLLHDEEE  120
VKRFYNLYAY KTGFSIRKAT HYKAKKKDNI VTALHYVCSK EGQSKPKVRD QENKGTPKKQ  180
MQYTRTGCKA HMRVKRTNDG KWEVVVFVRE HNHALVASPS KARFLRISQQ VKLCHLWQKE  240
KEEHRILTSL ERT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-20FAR1 family protein